How to rum Multiple ANOVA and Multiple T-test between the same groups?

classic Classic list List threaded Threaded
4 messages Options
Reply | Threaded
Open this post in threaded view
|

How to rum Multiple ANOVA and Multiple T-test between the same groups?

AbouEl-Makarim Aboueissa-3
Dear All: good morning





*Re:* How to rum Multiple ANOVA and Multiple T-test between the same groups.



Your help will be highly appreciated.





*1.*  is there a way to run multiple t-tests on different variables between
the same two groups.





*Data for t-tests:*



The data frame “dataTtest”  has 5 variables (x1,x2,x3,x4,x5) and one factor
(factor1) with 2 levels (group1, group2).





x1<-rnorm(20,1,1)

x2<-rnorm(20,2,1)

x3<-rnorm(20,3,1)

x4<-rnorm(20,4,1)

x5<-rnorm(20,5,1)

factor1<-rep(c("group1", "group2"), each = 10)

dataTtest<-data.frame(x1,x2,x3,x4,x5,factor1)

dataTtest









*2.* is there a way to run *multiple ANOVA* and multiple comparisons *Tukey
tests* on different variables between the same groups.





*Data for ANOVA tests:*



The data frame “dataANOVA”  has 6 variables (x1,x2,x3,x4,x5,x6) and one
factor (factor2) with 5 levels (group1, group2, group3, group4, group5).







x1<-rnorm(40,1,1)

x2<-rnorm(40,2,1)

x3<-rnorm(40,3,1)

x4<-rnorm(40,4,1)

x5<-rnorm(40,5,1)

x6<-rnorm(40,6,1)

factor2<-rep(c("group1", "group2", "group3", "group4", "group5"), each = 8)

dataANOVA<-data.frame(x1,x2,x3,x4,x5,x6,factor2)

dataANOVA





with many thanks

abou
______________________


*AbouEl-Makarim Aboueissa, PhD*

*Professor, Statistics and Data Science*
*Graduate Coordinator*

*Department of Mathematics and Statistics*
*University of Southern Maine*

        [[alternative HTML version deleted]]

______________________________________________
[hidden email] mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Reply | Threaded
Open this post in threaded view
|

Re: How to rum Multiple ANOVA and Multiple T-test between the same groups?

Prof. Dr. Matthias Kohl
Have a look at Bioconductor package genefilter, especially functions
colttests and colFtests.
Best Matthias

Am 10.02.19 um 10:35 schrieb AbouEl-Makarim Aboueissa:

> Dear All: good morning
>
>
>
>
>
> *Re:* How to rum Multiple ANOVA and Multiple T-test between the same groups.
>
>
>
> Your help will be highly appreciated.
>
>
>
>
>
> *1.*  is there a way to run multiple t-tests on different variables between
> the same two groups.
>
>
>
>
>
> *Data for t-tests:*
>
>
>
> The data frame “dataTtest”  has 5 variables (x1,x2,x3,x4,x5) and one factor
> (factor1) with 2 levels (group1, group2).
>
>
>
>
>
> x1<-rnorm(20,1,1)
>
> x2<-rnorm(20,2,1)
>
> x3<-rnorm(20,3,1)
>
> x4<-rnorm(20,4,1)
>
> x5<-rnorm(20,5,1)
>
> factor1<-rep(c("group1", "group2"), each = 10)
>
> dataTtest<-data.frame(x1,x2,x3,x4,x5,factor1)
>
> dataTtest
>
>
>
>
>
>
>
>
>
> *2.* is there a way to run *multiple ANOVA* and multiple comparisons *Tukey
> tests* on different variables between the same groups.
>
>
>
>
>
> *Data for ANOVA tests:*
>
>
>
> The data frame “dataANOVA”  has 6 variables (x1,x2,x3,x4,x5,x6) and one
> factor (factor2) with 5 levels (group1, group2, group3, group4, group5).
>
>
>
>
>
>
>
> x1<-rnorm(40,1,1)
>
> x2<-rnorm(40,2,1)
>
> x3<-rnorm(40,3,1)
>
> x4<-rnorm(40,4,1)
>
> x5<-rnorm(40,5,1)
>
> x6<-rnorm(40,6,1)
>
> factor2<-rep(c("group1", "group2", "group3", "group4", "group5"), each = 8)
>
> dataANOVA<-data.frame(x1,x2,x3,x4,x5,x6,factor2)
>
> dataANOVA
>
>
>
>
>
> with many thanks
>
> abou
> ______________________
>
>
> *AbouEl-Makarim Aboueissa, PhD*
>
> *Professor, Statistics and Data Science*
> *Graduate Coordinator*
>
> *Department of Mathematics and Statistics*
> *University of Southern Maine*
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
> [hidden email] mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>

--
Prof. Dr. Matthias Kohl
www.stamats.de

______________________________________________
[hidden email] mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Reply | Threaded
Open this post in threaded view
|

Re: How to rum Multiple ANOVA and Multiple T-test between the same groups?

AbouEl-Makarim Aboueissa-3
Dear Prof Kohl:


I am trying to install the "genefilter" package, but I got the following
error message(s). I am not sure which R version should be used for this
package.


*For R.3.5.2:*

> install.packages("genefilter")
Installing package into ‘C:/Users/aaboueissa/Documents/R/win-library/3.5’
(as ‘lib’ is unspecified)
Warning message:
package ‘genefilter’ is not available (for R version 3.5.2)


*For R.3.3.2:*

> install.packages("Bioconductor")
Installing package into ‘C:/Users/aaboueissa/Documents/R/win-library/3.3’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
Warning message:
package ‘Bioconductor’ is not available (for R version 3.3.2)


with many thanks
abou
______________________


*AbouEl-Makarim Aboueissa, PhD*

*Professor, Statistics and Data Science*
*Graduate Coordinator*

*Department of Mathematics and Statistics*
*University of Southern Maine*



On Sun, Feb 10, 2019 at 10:52 AM Prof. Dr. Matthias Kohl <
[hidden email]> wrote:

> Have a look at Bioconductor package genefilter, especially functions
> colttests and colFtests.
> Best Matthias
>
> Am 10.02.19 um 10:35 schrieb AbouEl-Makarim Aboueissa:
> > Dear All: good morning
> >
> >
> >
> >
> >
> > *Re:* How to rum Multiple ANOVA and Multiple T-test between the same
> groups.
> >
> >
> >
> > Your help will be highly appreciated.
> >
> >
> >
> >
> >
> > *1.*  is there a way to run multiple t-tests on different variables
> between
> > the same two groups.
> >
> >
> >
> >
> >
> > *Data for t-tests:*
> >
> >
> >
> > The data frame “dataTtest”  has 5 variables (x1,x2,x3,x4,x5) and one
> factor
> > (factor1) with 2 levels (group1, group2).
> >
> >
> >
> >
> >
> > x1<-rnorm(20,1,1)
> >
> > x2<-rnorm(20,2,1)
> >
> > x3<-rnorm(20,3,1)
> >
> > x4<-rnorm(20,4,1)
> >
> > x5<-rnorm(20,5,1)
> >
> > factor1<-rep(c("group1", "group2"), each = 10)
> >
> > dataTtest<-data.frame(x1,x2,x3,x4,x5,factor1)
> >
> > dataTtest
> >
> >
> >
> >
> >
> >
> >
> >
> >
> > *2.* is there a way to run *multiple ANOVA* and multiple comparisons
> *Tukey
> > tests* on different variables between the same groups.
> >
> >
> >
> >
> >
> > *Data for ANOVA tests:*
> >
> >
> >
> > The data frame “dataANOVA”  has 6 variables (x1,x2,x3,x4,x5,x6) and one
> > factor (factor2) with 5 levels (group1, group2, group3, group4, group5).
> >
> >
> >
> >
> >
> >
> >
> > x1<-rnorm(40,1,1)
> >
> > x2<-rnorm(40,2,1)
> >
> > x3<-rnorm(40,3,1)
> >
> > x4<-rnorm(40,4,1)
> >
> > x5<-rnorm(40,5,1)
> >
> > x6<-rnorm(40,6,1)
> >
> > factor2<-rep(c("group1", "group2", "group3", "group4", "group5"), each =
> 8)
> >
> > dataANOVA<-data.frame(x1,x2,x3,x4,x5,x6,factor2)
> >
> > dataANOVA
> >
> >
> >
> >
> >
> > with many thanks
> >
> > abou
> > ______________________
> >
> >
> > *AbouEl-Makarim Aboueissa, PhD*
> >
> > *Professor, Statistics and Data Science*
> > *Graduate Coordinator*
> >
> > *Department of Mathematics and Statistics*
> > *University of Southern Maine*
> >
> >       [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > [hidden email] mailing list -- To UNSUBSCRIBE and more, see
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
> >
>
> --
> Prof. Dr. Matthias Kohl
> www.stamats.de
>

        [[alternative HTML version deleted]]

______________________________________________
[hidden email] mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Reply | Threaded
Open this post in threaded view
|

Re: How to rum Multiple ANOVA and Multiple T-test between the same groups?

Boris Steipe
You need to spend more time getting clear on the fundamentals, what the Bioconductor project is and why its packages are useful in our domain. Bioconductor packages are not installed with the install.packages() function; that is for packages on CRAN. Instead, you use ...

  install.packages("BiocManager")     # BiocManagere IS hosted on CRAN
  BiocManager::install("genefilter")  # BiocManagerinstalls "genefilter" from bioconductor.org

Now, _do_ read the documentation, and pay special attention to the vignettes!

https://cran.r-project.org/web/packages/BiocManager/index.html
https://bioconductor.org/packages/release/bioc/html/genefilter.html



B.




> On 2019-02-10, at 17:44, AbouEl-Makarim Aboueissa <[hidden email]> wrote:
>
> Dear Prof Kohl:
>
>
> I am trying to install the "genefilter" package, but I got the following
> error message(s). I am not sure which R version should be used for this
> package.
>
>
> *For R.3.5.2:*
>
>> install.packages("genefilter")
> Installing package into ‘C:/Users/aaboueissa/Documents/R/win-library/3.5’
> (as ‘lib’ is unspecified)
> Warning message:
> package ‘genefilter’ is not available (for R version 3.5.2)
>
>
> *For R.3.3.2:*
>
>> install.packages("Bioconductor")
> Installing package into ‘C:/Users/aaboueissa/Documents/R/win-library/3.3’
> (as ‘lib’ is unspecified)
> --- Please select a CRAN mirror for use in this session ---
> Warning message:
> package ‘Bioconductor’ is not available (for R version 3.3.2)
>
>
> with many thanks
> abou
> ______________________
>
>
> *AbouEl-Makarim Aboueissa, PhD*
>
> *Professor, Statistics and Data Science*
> *Graduate Coordinator*
>
> *Department of Mathematics and Statistics*
> *University of Southern Maine*
>
>
>
> On Sun, Feb 10, 2019 at 10:52 AM Prof. Dr. Matthias Kohl <
> [hidden email]> wrote:
>
>> Have a look at Bioconductor package genefilter, especially functions
>> colttests and colFtests.
>> Best Matthias
>>
>> Am 10.02.19 um 10:35 schrieb AbouEl-Makarim Aboueissa:
>>> Dear All: good morning
>>>
>>>
>>>
>>>
>>>
>>> *Re:* How to rum Multiple ANOVA and Multiple T-test between the same
>> groups.
>>>
>>>
>>>
>>> Your help will be highly appreciated.
>>>
>>>
>>>
>>>
>>>
>>> *1.*  is there a way to run multiple t-tests on different variables
>> between
>>> the same two groups.
>>>
>>>
>>>
>>>
>>>
>>> *Data for t-tests:*
>>>
>>>
>>>
>>> The data frame “dataTtest”  has 5 variables (x1,x2,x3,x4,x5) and one
>> factor
>>> (factor1) with 2 levels (group1, group2).
>>>
>>>
>>>
>>>
>>>
>>> x1<-rnorm(20,1,1)
>>>
>>> x2<-rnorm(20,2,1)
>>>
>>> x3<-rnorm(20,3,1)
>>>
>>> x4<-rnorm(20,4,1)
>>>
>>> x5<-rnorm(20,5,1)
>>>
>>> factor1<-rep(c("group1", "group2"), each = 10)
>>>
>>> dataTtest<-data.frame(x1,x2,x3,x4,x5,factor1)
>>>
>>> dataTtest
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>> *2.* is there a way to run *multiple ANOVA* and multiple comparisons
>> *Tukey
>>> tests* on different variables between the same groups.
>>>
>>>
>>>
>>>
>>>
>>> *Data for ANOVA tests:*
>>>
>>>
>>>
>>> The data frame “dataANOVA”  has 6 variables (x1,x2,x3,x4,x5,x6) and one
>>> factor (factor2) with 5 levels (group1, group2, group3, group4, group5).
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>> x1<-rnorm(40,1,1)
>>>
>>> x2<-rnorm(40,2,1)
>>>
>>> x3<-rnorm(40,3,1)
>>>
>>> x4<-rnorm(40,4,1)
>>>
>>> x5<-rnorm(40,5,1)
>>>
>>> x6<-rnorm(40,6,1)
>>>
>>> factor2<-rep(c("group1", "group2", "group3", "group4", "group5"), each =
>> 8)
>>>
>>> dataANOVA<-data.frame(x1,x2,x3,x4,x5,x6,factor2)
>>>
>>> dataANOVA
>>>
>>>
>>>
>>>
>>>
>>> with many thanks
>>>
>>> abou
>>> ______________________
>>>
>>>
>>> *AbouEl-Makarim Aboueissa, PhD*
>>>
>>> *Professor, Statistics and Data Science*
>>> *Graduate Coordinator*
>>>
>>> *Department of Mathematics and Statistics*
>>> *University of Southern Maine*
>>>
>>>      [[alternative HTML version deleted]]
>>>
>>> ______________________________________________
>>> [hidden email] mailing list -- To UNSUBSCRIBE and more, see
>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>> PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html
>>> and provide commented, minimal, self-contained, reproducible code.
>>>
>>
>> --
>> Prof. Dr. Matthias Kohl
>> www.stamats.de
>>
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
> [hidden email] mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

______________________________________________
[hidden email] mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.