Rmpi instlation problem (PR#8846)

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Rmpi instlation problem (PR#8846)

ebarreto
Ive tryed this:

R CMD INSTALL Rmpi_0.5-2.tar.gz

But occurred this error:

gcc -shared -L/usr/local/lib64 -o Rmpi.so conversion.o internal.o RegQuery.o
Rmpi.o -lmpi -llam -lutil -lpthread   -L/usr/local/lib64/R/lib -lR
/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.3/../../../../x86_64-suse-linux/bin
/ld: /usr/local/lib/libmpi.a(infoset.o): relocation R_X86_64_32 can not be
used when making a shared object; recompile with -fPIC
/usr/local/lib/libmpi.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
make: *** [Rmpi.so] Error 1
chmod: cannot access `/usr/local/lib64/R/library/Rmpi/libs/*': No such file
or directory
ERROR: compilation failed for package 'Rmpi'
** Removing '/usr/local/lib64/R/library/Rmpi'

May you give me some advice

Best
EBH


--------------------------------------------------------
Emiliano Barreto_Hernandez
Profesor Asociado
Colombia EMBnet Node Manager
Centro de Bioinformática
Instituto de Biotecnología - Universidad Nacional de Colombia
Edificio Manuel Ancizar
Bogotá - Colombia
Tel +57 3165000 ext 16956 Fax +571 3165415
[hidden email]
http://bioinf.ibun.unal.edu.co
http://www.co.embnet.org

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Re: Rmpi instlation problem (PR#8846)

Prof Brian Ripley
  This message is in MIME format.  The first part should be readable text,
  while the remaining parts are likely unreadable without MIME-aware tools.

--27464147-1443006808-1147172576=:8133
Content-Type: TEXT/PLAIN; charset=iso-8859-1; format=flowed
Content-Transfer-Encoding: 8BIT

First, please do not abuse the bug reporting address to report errors in
your own system or in a contributed package: see the FAQ and posting
guide.  Basic information is missing here, but this looks like a x86_64
version of Linux.

The message here is very clear: the error is in /usr/local/lib/libmpi.a.
This issue is discussed in the R-admin manual, so please consult it.
You need to re-build your installation of MPI as the message suggests.

On Tue, 9 May 2006, [hidden email] wrote:

> Ive tryed this:
>
> R CMD INSTALL Rmpi_0.5-2.tar.gz
>
> But occurred this error:
>
> gcc -shared -L/usr/local/lib64 -o Rmpi.so conversion.o internal.o RegQuery.o
> Rmpi.o -lmpi -llam -lutil -lpthread   -L/usr/local/lib64/R/lib -lR
> /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.3/../../../../x86_64-suse-linux/bin
> /ld: /usr/local/lib/libmpi.a(infoset.o): relocation R_X86_64_32 can not be
> used when making a shared object; recompile with -fPIC
> /usr/local/lib/libmpi.a: could not read symbols: Bad value
> collect2: ld returned 1 exit status
> make: *** [Rmpi.so] Error 1
> chmod: cannot access `/usr/local/lib64/R/library/Rmpi/libs/*': No such file
> or directory
> ERROR: compilation failed for package 'Rmpi'
> ** Removing '/usr/local/lib64/R/library/Rmpi'
>
> May you give me some advice
>
> Best
> EBH
>
>
> --------------------------------------------------------
> Emiliano Barreto_Hernandez
> Profesor Asociado
> Colombia EMBnet Node Manager
> Centro de Bioinformática
> Instituto de Biotecnología - Universidad Nacional de Colombia
> Edificio Manuel Ancizar
> Bogotá - Colombia
> Tel +57 3165000 ext 16956 Fax +571 3165415
> [hidden email]
> http://bioinf.ibun.unal.edu.co
> http://www.co.embnet.org
>
> ______________________________________________
> [hidden email] mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>
>

--
Brian D. Ripley,                  [hidden email]
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595
--27464147-1443006808-1147172576=:8133--

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