The primary error seems to be:
"Creating a new generic function for "diff" in "spam"
Error in setGeneric(f, where = where) :
must supply a function skeleton, explicitly or via an existing function"
And the full output follows. Any thoughts on what may be happening
and/or how to work around the problem?
Thanks!
> install.packages('fields')
Installing package(s) into ‘/usr/local/lib/R/site-library’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
CRAN mirror
1: Argentina (La Plata) 2: Argentina (Mendoza)
[...]
Selection: 1
also installing the dependency ‘spam’
trying URL '
http://mirror.fcaglp.unlp.edu.ar/CRAN/src/contrib/spam_0.29-1.tar.gz'Content type 'application/x-gzip' length 396179 bytes (386 Kb)
opened URL
==================================================
downloaded 386 Kb
trying URL '
http://mirror.fcaglp.unlp.edu.ar/CRAN/src/contrib/fields_6.6.3.tar.gz'Content type 'application/x-gzip' length 2488570 bytes (2.4 Mb)
opened URL
==================================================
downloaded 2.4 Mb
* installing *source* package ‘spam’ ...
** libs
gfortran -fpic -O3 -pipe -g -c bckslvmodified.f -o bckslvmodified.o
gfortran -fpic -O3 -pipe -g -c cholmodified.f -o cholmodified.o
gfortran -fpic -O3 -pipe -g -c dist.f -o dist.o
gfortran -fpic -O3 -pipe -g -c fromsparsekit.f -o fromsparsekit.o
gfortran -fpic -O3 -pipe -g -c kronecker.f -o kronecker.o
gfortran -fpic -O3 -pipe -g -c permutation.f -o permutation.o
gfortran -fpic -O3 -pipe -g -c rowcolstats.f -o rowcolstats.o
gfortran -fpic -O3 -pipe -g -c spamown.f -o spamown.o
gfortran -fpic -O3 -pipe -g -c spamown2.f -o spamown2.o
gfortran -fpic -O3 -pipe -g -c xybind.f -o xybind.o
gcc -shared -o spam.so bckslvmodified.o cholmodified.o dist.o fromsparsekit.o kronecker.o permutation.o rowcolstats.o s\
pamown.o spamown2.o xybind.o -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
installing to /usr/local/lib/R/site-library/spam/libs
** R
** data
** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
Creating a new generic function for "print" in "spam"
Creating a new generic function for "summary" in "spam"
Creating a new generic function for "diag" in "spam"
Creating a new generic function for "diag<-" in "spam"
Creating a new generic function for "t" in "spam"
Creating a new generic function for "as.matrix" in "spam"
Creating a new generic function for "all.equal" in "spam"
Creating a new generic function for "isSymmetric" in "spam"
Creating a new generic function for "diff" in "spam"
Error in setGeneric(f, where = where) :
must supply a function skeleton, explicitly or via an existing function
Error : unable to load R code in package 'spam'
ERROR: lazy loading failed for package ‘spam’
* removing ‘/usr/local/lib/R/site-library/spam’
ERROR: dependency ‘spam’ is not available for package ‘fields’
* removing ‘/usr/local/lib/R/site-library/fields’
The downloaded packages are in
‘/tmp/RtmpauQxtX/downloaded_packages’
Warning messages:
1: In install.packages("fields") :
installation of package 'spam' had non-zero exit status
2: In install.packages("fields") :
installation of package 'fields' had non-zero exit status
>
Locked
