pgfSweave-example not compiling

[Peter Meilstrup]

I'm trying to get pgfSweave up and running. Hopefully I can get it
working from within LyX, but first I'm just trying to get the simplest
possible thing (compiling one of the example files in the pgfSweave
package) to work. I'm using the example that comes in the pgfSweave
package unmodified, but for reference I copied it to:

http://pastebin.com/tW4RL6fs

Configuration:
R version 2.13.1 on OS X (intel) 10.5.8
pgfSweave package version 1.2.1
tikzDevice version 0.6.1
MacTeX 2011 installed
tikz/pgf package version 2.10

Here is what I tried; I copied the file pgfSweave-example.Rnw into my
working directory, created a "cache" dir and ran:

> require("pgfSweave")
> pgfSweave("pgfSweave-example.Rnw")

This did some computation and then complained about a missing bracket:

! Missing } inserted.
<inserted text>
                }
l.439 \end{figure}

After I dismissed this, it seemed to fail with various errors.

make: *** [pgfSweave-example-boxplot.pdf] Error 1
Error in tools::texi2dvi(paste(fn, "tex", sep = "."), pdf = pdf, ...) :
  Running 'texi2dvi' on 'pgfSweave-example.tex' failed.
LaTeX errors:
! Package tikz Warning: Some images are not up-to-date and need to be generated
.  [1

Rerunning pgfSweave led to the same errors.
The process created a .pdf file, but in place of a figure it has the notice:

"[[ Image Discarded Due To ‘/tikz/external/mode=list and make’ ]] NA  "

Upon inspecting the log file I found this notice:

===== mode=`list and make': Use 'make -f pgfSweave-example.makefile' to generat
e all images. Then, re-run (pdf)latex pgfSweave-example. =====

I tried following this instruction, but it also produced an error:

bayanus-2:writing peter$ make -f pgfSweave-example.makefile
pdflatex -halt-on-error -interaction=batchmode -jobname
"pgfSweave-example-boxplot"
"\def\tikzexternalrealjob{pgfSweave-example}\input{pgfSweave-example}"
This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011)
 restricted \write18 enabled.
entering extended mode
make: *** [pgfSweave-example-boxplot.pdf] Error 1

I put the full R transcript at http://pastebin.com/aZECxKyP in case
that contains additional useful information.
I also put the contents of pgfSweave-example.log at
http://pastebin.com/LzZW1z3R .
Also pgfSweave-example-boxplot.log at http://pastebin.com/AF3TCCEK .

What's going wrong?
Cheers,
Peter

______________________________________________
[hidden email] mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

[Yihui Xie-2]

Seems to be weird. I can run the example smoothly under Ubuntu with R
2.13.2. Could you also post your .tex file?

Regards,
Yihui
--
Yihui Xie <[hidden email]>
Phone: [phone] Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA



On Thu, Oct 13, 2011 at 7:01 PM, Peter Meilstrup
<[hidden email]> wrote:

> I'm trying to get pgfSweave up and running. Hopefully I can get it
> working from within LyX, but first I'm just trying to get the simplest
> possible thing (compiling one of the example files in the pgfSweave
> package) to work. I'm using the example that comes in the pgfSweave
> package unmodified, but for reference I copied it to:
>
> http://pastebin.com/tW4RL6fs
>
> Configuration:
> R version 2.13.1 on OS X (intel) 10.5.8
> pgfSweave package version 1.2.1
> tikzDevice version 0.6.1
> MacTeX 2011 installed
> tikz/pgf package version 2.10
>
> Here is what I tried; I copied the file pgfSweave-example.Rnw into my
> working directory, created a "cache" dir and ran:
>
>> require("pgfSweave")
>> pgfSweave("pgfSweave-example.Rnw")
>
> This did some computation and then complained about a missing bracket:
>
> ! Missing } inserted.
> <inserted text>
>                 }
> l.439 \end{figure}
>
> After I dismissed this, it seemed to fail with various errors.
>
> make: *** [pgfSweave-example-boxplot.pdf] Error 1
> Error in tools::texi2dvi(paste(fn, "tex", sep = "."), pdf = pdf, ...) :
>   Running 'texi2dvi' on 'pgfSweave-example.tex' failed.
> LaTeX errors:
> ! Package tikz Warning: Some images are not up-to-date and need to be generated
> .  [1
>
> Rerunning pgfSweave led to the same errors.
> The process created a .pdf file, but in place of a figure it has the notice:
>
> "[[ Image Discarded Due To ‘/tikz/external/mode=list and make’ ]] NA  "
>
> Upon inspecting the log file I found this notice:
>
> ===== mode=`list and make': Use 'make -f pgfSweave-example.makefile' to generat
> e all images. Then, re-run (pdf)latex pgfSweave-example. =====
>
> I tried following this instruction, but it also produced an error:
>
> bayanus-2:writing peter$ make -f pgfSweave-example.makefile
> pdflatex -halt-on-error -interaction=batchmode -jobname
> "pgfSweave-example-boxplot"
> "\def\tikzexternalrealjob{pgfSweave-example}\input{pgfSweave-example}"
> This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011)
>  restricted \write18 enabled.
> entering extended mode
> make: *** [pgfSweave-example-boxplot.pdf] Error 1
>
> I put the full R transcript at http://pastebin.com/aZECxKyP in case
> that contains additional useful information.
> I also put the contents of pgfSweave-example.log at
> http://pastebin.com/LzZW1z3R .
> Also pgfSweave-example-boxplot.log at http://pastebin.com/AF3TCCEK .
>
> What's going wrong?
> Cheers,
> Peter
>
> ______________________________________________
> [hidden email] mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>

______________________________________________
[hidden email] mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

[Peter Meilstrup]

Sure, here's the generated .tex file:
http://pastebin.com/b9fTsr0h

Peter

On Thu, Oct 13, 2011 at 6:14 PM, Yihui Xie <[hidden email]> wrote:

> Seems to be weird. I can run the example smoothly under Ubuntu with R
> 2.13.2. Could you also post your .tex file?
>
> Regards,
> Yihui
> --
> Yihui Xie <[hidden email]>
> Phone: [phone] Web: http://yihui.name
> Department of Statistics, Iowa State University
> 2215 Snedecor Hall, Ames, IA
>
>
>
> On Thu, Oct 13, 2011 at 7:01 PM, Peter Meilstrup
> <[hidden email]> wrote:
>> I'm trying to get pgfSweave up and running. Hopefully I can get it
>> working from within LyX, but first I'm just trying to get the simplest
>> possible thing (compiling one of the example files in the pgfSweave
>> package) to work. I'm using the example that comes in the pgfSweave
>> package unmodified, but for reference I copied it to:
>>
>> http://pastebin.com/tW4RL6fs
>>
>> Configuration:
>> R version 2.13.1 on OS X (intel) 10.5.8
>> pgfSweave package version 1.2.1
>> tikzDevice version 0.6.1
>> MacTeX 2011 installed
>> tikz/pgf package version 2.10
>>
>> Here is what I tried; I copied the file pgfSweave-example.Rnw into my
>> working directory, created a "cache" dir and ran:
>>
>>> require("pgfSweave")
>>> pgfSweave("pgfSweave-example.Rnw")
>>
>> This did some computation and then complained about a missing bracket:
>>
>> ! Missing } inserted.
>> <inserted text>
>>                 }
>> l.439 \end{figure}
>>
>> After I dismissed this, it seemed to fail with various errors.
>>
>> make: *** [pgfSweave-example-boxplot.pdf] Error 1
>> Error in tools::texi2dvi(paste(fn, "tex", sep = "."), pdf = pdf, ...) :
>>   Running 'texi2dvi' on 'pgfSweave-example.tex' failed.
>> LaTeX errors:
>> ! Package tikz Warning: Some images are not up-to-date and need to be generated
>> .  [1
>>
>> Rerunning pgfSweave led to the same errors.
>> The process created a .pdf file, but in place of a figure it has the notice:
>>
>> "[[ Image Discarded Due To ‘/tikz/external/mode=list and make’ ]] NA  "
>>
>> Upon inspecting the log file I found this notice:
>>
>> ===== mode=`list and make': Use 'make -f pgfSweave-example.makefile' to generat
>> e all images. Then, re-run (pdf)latex pgfSweave-example. =====
>>
>> I tried following this instruction, but it also produced an error:
>>
>> bayanus-2:writing peter$ make -f pgfSweave-example.makefile
>> pdflatex -halt-on-error -interaction=batchmode -jobname
>> "pgfSweave-example-boxplot"
>> "\def\tikzexternalrealjob{pgfSweave-example}\input{pgfSweave-example}"
>> This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011)
>>  restricted \write18 enabled.
>> entering extended mode
>> make: *** [pgfSweave-example-boxplot.pdf] Error 1
>>
>> I put the full R transcript at http://pastebin.com/aZECxKyP in case
>> that contains additional useful information.
>> I also put the contents of pgfSweave-example.log at
>> http://pastebin.com/LzZW1z3R .
>> Also pgfSweave-example-boxplot.log at http://pastebin.com/AF3TCCEK .
>>
>> What's going wrong?
>> Cheers,
>> Peter
>>
>> ______________________________________________
>> [hidden email] mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>>
>

______________________________________________
[hidden email] mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

[Yihui Xie-2]

OK, that is really helpful for diagnosis. In line 436 of your tex
file, there is an NA, but it should really be this:

}% this brace ends the effect of ‘include external’

So the reason for LaTeX failure was this missing bracket }. And the
reason for R to output NA here is most likely to be that in the LaTeX
comment here, there are curly quotes, which are not ASCII characters.
To solve the problem, you can either delete these non-ASCII
characters, or tell Sweave that your encoding is not latin1, but UTF8.
The latter way may not be directly possible, and this is why I brought
up the issue to pgfSweave developers:
https://github.com/cameronbracken/pgfSweave/issues/34

Regards,
Yihui
--
Yihui Xie <[hidden email]>
Phone: [phone] Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA



On Thu, Oct 13, 2011 at 8:34 PM, Peter Meilstrup
<[hidden email]> wrote:

> Sure, here's the generated .tex file:
> http://pastebin.com/b9fTsr0h
>
> Peter
>
> On Thu, Oct 13, 2011 at 6:14 PM, Yihui Xie <[hidden email]> wrote:
>> Seems to be weird. I can run the example smoothly under Ubuntu with R
>> 2.13.2. Could you also post your .tex file?
>>
>> Regards,
>> Yihui
>> --
>> Yihui Xie <[hidden email]>
>> Phone: [phone] Web: http://yihui.name
>> Department of Statistics, Iowa State University
>> 2215 Snedecor Hall, Ames, IA
>>
>>
>>
>> On Thu, Oct 13, 2011 at 7:01 PM, Peter Meilstrup
>> <[hidden email]> wrote:
>>> I'm trying to get pgfSweave up and running. Hopefully I can get it
>>> working from within LyX, but first I'm just trying to get the simplest
>>> possible thing (compiling one of the example files in the pgfSweave
>>> package) to work. I'm using the example that comes in the pgfSweave
>>> package unmodified, but for reference I copied it to:
>>>
>>> http://pastebin.com/tW4RL6fs
>>>
>>> Configuration:
>>> R version 2.13.1 on OS X (intel) 10.5.8
>>> pgfSweave package version 1.2.1
>>> tikzDevice version 0.6.1
>>> MacTeX 2011 installed
>>> tikz/pgf package version 2.10
>>>
>>> Here is what I tried; I copied the file pgfSweave-example.Rnw into my
>>> working directory, created a "cache" dir and ran:
>>>
>>>> require("pgfSweave")
>>>> pgfSweave("pgfSweave-example.Rnw")
>>>
>>> This did some computation and then complained about a missing bracket:
>>>
>>> ! Missing } inserted.
>>> <inserted text>
>>>                 }
>>> l.439 \end{figure}
>>>
>>> After I dismissed this, it seemed to fail with various errors.
>>>
>>> make: *** [pgfSweave-example-boxplot.pdf] Error 1
>>> Error in tools::texi2dvi(paste(fn, "tex", sep = "."), pdf = pdf, ...) :
>>>   Running 'texi2dvi' on 'pgfSweave-example.tex' failed.
>>> LaTeX errors:
>>> ! Package tikz Warning: Some images are not up-to-date and need to be generated
>>> .  [1
>>>
>>> Rerunning pgfSweave led to the same errors.
>>> The process created a .pdf file, but in place of a figure it has the notice:
>>>
>>> "[[ Image Discarded Due To ‘/tikz/external/mode=list and make’ ]] NA  "
>>>
>>> Upon inspecting the log file I found this notice:
>>>
>>> ===== mode=`list and make': Use 'make -f pgfSweave-example.makefile' to generat
>>> e all images. Then, re-run (pdf)latex pgfSweave-example. =====
>>>
>>> I tried following this instruction, but it also produced an error:
>>>
>>> bayanus-2:writing peter$ make -f pgfSweave-example.makefile
>>> pdflatex -halt-on-error -interaction=batchmode -jobname
>>> "pgfSweave-example-boxplot"
>>> "\def\tikzexternalrealjob{pgfSweave-example}\input{pgfSweave-example}"
>>> This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011)
>>>  restricted \write18 enabled.
>>> entering extended mode
>>> make: *** [pgfSweave-example-boxplot.pdf] Error 1
>>>
>>> I put the full R transcript at http://pastebin.com/aZECxKyP in case
>>> that contains additional useful information.
>>> I also put the contents of pgfSweave-example.log at
>>> http://pastebin.com/LzZW1z3R .
>>> Also pgfSweave-example-boxplot.log at http://pastebin.com/AF3TCCEK .
>>>
>>> What's going wrong?
>>> Cheers,
>>> Peter
>>>
>>> ______________________________________________
>>> [hidden email] mailing list
>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>>> and provide commented, minimal, self-contained, reproducible code.
>>>
>>
>

______________________________________________
[hidden email] mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

[Peter Meilstrup]

Thanks, that lets me move to the next step in figuring out what's
wrong with my document :) Funny enough that's not the first problem
I've had with Sweave and non-ascii characters.

Peter

On Thu, Oct 13, 2011 at 7:30 PM, Yihui Xie <[hidden email]> wrote:

> OK, that is really helpful for diagnosis. In line 436 of your tex
> file, there is an NA, but it should really be this:
>
> }% this brace ends the effect of ‘include external’
>
> So the reason for LaTeX failure was this missing bracket }. And the
> reason for R to output NA here is most likely to be that in the LaTeX
> comment here, there are curly quotes, which are not ASCII characters.
> To solve the problem, you can either delete these non-ASCII
> characters, or tell Sweave that your encoding is not latin1, but UTF8.
> The latter way may not be directly possible, and this is why I brought
> up the issue to pgfSweave developers:
> https://github.com/cameronbracken/pgfSweave/issues/34
>
> Regards,
> Yihui
> --
> Yihui Xie <[hidden email]>
> Phone: [phone] Web: http://yihui.name
> Department of Statistics, Iowa State University
> 2215 Snedecor Hall, Ames, IA
>
>
>
> On Thu, Oct 13, 2011 at 8:34 PM, Peter Meilstrup
> <[hidden email]> wrote:
>> Sure, here's the generated .tex file:
>> http://pastebin.com/b9fTsr0h
>>
>> Peter
>>
>> On Thu, Oct 13, 2011 at 6:14 PM, Yihui Xie <[hidden email]> wrote:
>>> Seems to be weird. I can run the example smoothly under Ubuntu with R
>>> 2.13.2. Could you also post your .tex file?
>>>
>>> Regards,
>>> Yihui
>>> --
>>> Yihui Xie <[hidden email]>
>>> Phone: [phone] Web: http://yihui.name
>>> Department of Statistics, Iowa State University
>>> 2215 Snedecor Hall, Ames, IA
>>>
>>>
>>>
>>> On Thu, Oct 13, 2011 at 7:01 PM, Peter Meilstrup
>>> <[hidden email]> wrote:
>>>> I'm trying to get pgfSweave up and running. Hopefully I can get it
>>>> working from within LyX, but first I'm just trying to get the simplest
>>>> possible thing (compiling one of the example files in the pgfSweave
>>>> package) to work. I'm using the example that comes in the pgfSweave
>>>> package unmodified, but for reference I copied it to:
>>>>
>>>> http://pastebin.com/tW4RL6fs
>>>>
>>>> Configuration:
>>>> R version 2.13.1 on OS X (intel) 10.5.8
>>>> pgfSweave package version 1.2.1
>>>> tikzDevice version 0.6.1
>>>> MacTeX 2011 installed
>>>> tikz/pgf package version 2.10
>>>>
>>>> Here is what I tried; I copied the file pgfSweave-example.Rnw into my
>>>> working directory, created a "cache" dir and ran:
>>>>
>>>>> require("pgfSweave")
>>>>> pgfSweave("pgfSweave-example.Rnw")
>>>>
>>>> This did some computation and then complained about a missing bracket:
>>>>
>>>> ! Missing } inserted.
>>>> <inserted text>
>>>>                 }
>>>> l.439 \end{figure}
>>>>
>>>> After I dismissed this, it seemed to fail with various errors.
>>>>
>>>> make: *** [pgfSweave-example-boxplot.pdf] Error 1
>>>> Error in tools::texi2dvi(paste(fn, "tex", sep = "."), pdf = pdf, ...) :
>>>>   Running 'texi2dvi' on 'pgfSweave-example.tex' failed.
>>>> LaTeX errors:
>>>> ! Package tikz Warning: Some images are not up-to-date and need to be generated
>>>> .  [1
>>>>
>>>> Rerunning pgfSweave led to the same errors.
>>>> The process created a .pdf file, but in place of a figure it has the notice:
>>>>
>>>> "[[ Image Discarded Due To ‘/tikz/external/mode=list and make’ ]] NA  "
>>>>
>>>> Upon inspecting the log file I found this notice:
>>>>
>>>> ===== mode=`list and make': Use 'make -f pgfSweave-example.makefile' to generat
>>>> e all images. Then, re-run (pdf)latex pgfSweave-example. =====
>>>>
>>>> I tried following this instruction, but it also produced an error:
>>>>
>>>> bayanus-2:writing peter$ make -f pgfSweave-example.makefile
>>>> pdflatex -halt-on-error -interaction=batchmode -jobname
>>>> "pgfSweave-example-boxplot"
>>>> "\def\tikzexternalrealjob{pgfSweave-example}\input{pgfSweave-example}"
>>>> This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011)
>>>>  restricted \write18 enabled.
>>>> entering extended mode
>>>> make: *** [pgfSweave-example-boxplot.pdf] Error 1
>>>>
>>>> I put the full R transcript at http://pastebin.com/aZECxKyP in case
>>>> that contains additional useful information.
>>>> I also put the contents of pgfSweave-example.log at
>>>> http://pastebin.com/LzZW1z3R .
>>>> Also pgfSweave-example-boxplot.log at http://pastebin.com/AF3TCCEK .
>>>>
>>>> What's going wrong?
>>>> Cheers,
>>>> Peter
>>>>
>>>> ______________________________________________
>>>> [hidden email] mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>>>> and provide commented, minimal, self-contained, reproducible code.
>>>>
>>>
>>
>

______________________________________________
[hidden email] mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

[Yihui Xie-2]

Yes, it is a little bit amazing to me too, so let's cc to the package
maintainer to see if he can do anything.

Regards,
Yihui
--
Yihui Xie <[hidden email]>
Phone: [phone] Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA



On Fri, Oct 14, 2011 at 12:06 AM, Peter Meilstrup
<[hidden email]> wrote:

> Thanks, that lets me move to the next step in figuring out what's
> wrong with my document :) Funny enough that's not the first problem
> I've had with Sweave and non-ascii characters.
>
> Peter
>
> On Thu, Oct 13, 2011 at 7:30 PM, Yihui Xie <[hidden email]> wrote:
>> OK, that is really helpful for diagnosis. In line 436 of your tex
>> file, there is an NA, but it should really be this:
>>
>> }% this brace ends the effect of ‘include external’
>>
>> So the reason for LaTeX failure was this missing bracket }. And the
>> reason for R to output NA here is most likely to be that in the LaTeX
>> comment here, there are curly quotes, which are not ASCII characters.
>> To solve the problem, you can either delete these non-ASCII
>> characters, or tell Sweave that your encoding is not latin1, but UTF8.
>> The latter way may not be directly possible, and this is why I brought
>> up the issue to pgfSweave developers:
>> https://github.com/cameronbracken/pgfSweave/issues/34
>>
>> Regards,
>> Yihui
>> --
>> Yihui Xie <[hidden email]>
>> Phone: [phone] Web: http://yihui.name
>> Department of Statistics, Iowa State University
>> 2215 Snedecor Hall, Ames, IA
>>
>>
>>
>> On Thu, Oct 13, 2011 at 8:34 PM, Peter Meilstrup
>> <[hidden email]> wrote:
>>> Sure, here's the generated .tex file:
>>> http://pastebin.com/b9fTsr0h
>>>
>>> Peter
>>>
>>> On Thu, Oct 13, 2011 at 6:14 PM, Yihui Xie <[hidden email]> wrote:
>>>> Seems to be weird. I can run the example smoothly under Ubuntu with R
>>>> 2.13.2. Could you also post your .tex file?
>>>>
>>>> Regards,
>>>> Yihui
>>>> --
>>>> Yihui Xie <[hidden email]>
>>>> Phone: [phone] Web: http://yihui.name
>>>> Department of Statistics, Iowa State University
>>>> 2215 Snedecor Hall, Ames, IA
>>>>
>>>>
>>>>
>>>> On Thu, Oct 13, 2011 at 7:01 PM, Peter Meilstrup
>>>> <[hidden email]> wrote:
>>>>> I'm trying to get pgfSweave up and running. Hopefully I can get it
>>>>> working from within LyX, but first I'm just trying to get the simplest
>>>>> possible thing (compiling one of the example files in the pgfSweave
>>>>> package) to work. I'm using the example that comes in the pgfSweave
>>>>> package unmodified, but for reference I copied it to:
>>>>>
>>>>> http://pastebin.com/tW4RL6fs
>>>>>
>>>>> Configuration:
>>>>> R version 2.13.1 on OS X (intel) 10.5.8
>>>>> pgfSweave package version 1.2.1
>>>>> tikzDevice version 0.6.1
>>>>> MacTeX 2011 installed
>>>>> tikz/pgf package version 2.10
>>>>>
>>>>> Here is what I tried; I copied the file pgfSweave-example.Rnw into my
>>>>> working directory, created a "cache" dir and ran:
>>>>>
>>>>>> require("pgfSweave")
>>>>>> pgfSweave("pgfSweave-example.Rnw")
>>>>>
>>>>> This did some computation and then complained about a missing bracket:
>>>>>
>>>>> ! Missing } inserted.
>>>>> <inserted text>
>>>>>                 }
>>>>> l.439 \end{figure}
>>>>>
>>>>> After I dismissed this, it seemed to fail with various errors.
>>>>>
>>>>> make: *** [pgfSweave-example-boxplot.pdf] Error 1
>>>>> Error in tools::texi2dvi(paste(fn, "tex", sep = "."), pdf = pdf, ...) :
>>>>>   Running 'texi2dvi' on 'pgfSweave-example.tex' failed.
>>>>> LaTeX errors:
>>>>> ! Package tikz Warning: Some images are not up-to-date and need to be generated
>>>>> .  [1
>>>>>
>>>>> Rerunning pgfSweave led to the same errors.
>>>>> The process created a .pdf file, but in place of a figure it has the notice:
>>>>>
>>>>> "[[ Image Discarded Due To ‘/tikz/external/mode=list and make’ ]] NA  "
>>>>>
>>>>> Upon inspecting the log file I found this notice:
>>>>>
>>>>> ===== mode=`list and make': Use 'make -f pgfSweave-example.makefile' to generat
>>>>> e all images. Then, re-run (pdf)latex pgfSweave-example. =====
>>>>>
>>>>> I tried following this instruction, but it also produced an error:
>>>>>
>>>>> bayanus-2:writing peter$ make -f pgfSweave-example.makefile
>>>>> pdflatex -halt-on-error -interaction=batchmode -jobname
>>>>> "pgfSweave-example-boxplot"
>>>>> "\def\tikzexternalrealjob{pgfSweave-example}\input{pgfSweave-example}"
>>>>> This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011)
>>>>>  restricted \write18 enabled.
>>>>> entering extended mode
>>>>> make: *** [pgfSweave-example-boxplot.pdf] Error 1
>>>>>
>>>>> I put the full R transcript at http://pastebin.com/aZECxKyP in case
>>>>> that contains additional useful information.
>>>>> I also put the contents of pgfSweave-example.log at
>>>>> http://pastebin.com/LzZW1z3R .
>>>>> Also pgfSweave-example-boxplot.log at http://pastebin.com/AF3TCCEK .
>>>>>
>>>>> What's going wrong?
>>>>> Cheers,
>>>>> Peter
>>>>>
>>>>> ______________________________________________
>>>>> [hidden email] mailing list
>>>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>>>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>>>>> and provide commented, minimal, self-contained, reproducible code.
>>>>>
>>>>
>>>
>>
>

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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.