AnnotationDBI and RSQLite installation problem

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AnnotationDBI and RSQLite installation problem

Maya Bercovich
Hi All,

I tried to install AnnotationDBI
like so:
source("http://bioconductor.org/biocLite.R")
biocLite("AnnotationDbi")
and got this error:
....

Loading required package: RSQLite
Error in dyn.load(file, ...) :
   unable to load shared library '/RHEL3/local/lib64/R/library/
RSQLite/libs/RSQLite.so':
   /RHEL3/local/lib64/R/library/RSQLite/libs/RSQLite.so: undefined  
symbol: sqlite3_bind_int
Error: package 'RSQLite' could not be loaded
Execution halted
ERROR: lazy loading failed for package 'AnnotationDbi'
** Removing '/RHEL3/local/lib64/R/library/AnnotationDbi'

The downloaded packages are in
         /RHEL3/tmp/Rtmp6ex1Pz/downloaded_packages
Updating HTML index of packages in '.Library'
Warning message:
In install.packages(pkgs = pkgs, repos = repos, dependencies =  
dependencies,  :
   installation of package 'AnnotationDbi' had non-zero exit status
 >

However, I did install RSQLite and the installation finished with no  
errors.

But:

 > require(RSQLite)
Loading required package: RSQLite
Error in dyn.load(file, ...) :
   unable to load shared library '/usr/local/lib64/R/library/RSQLite/
libs/RSQLite.so':
   /usr/local/lib64/R/library/RSQLite/libs/RSQLite.so: undefined  
symbol: sqlite3_bind_int

The library and file do exist with 755 permissions.

My session info:

 > sessionInfo()
R version 2.6.2 (2008-02-08)
x86_64-unknown-linux-gnu

locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.U
TF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-
8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_ID
ENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] DBI_0.2-4

loaded via a namespace (and not attached):
[1] rcompgen_0.1-17 tools_2.6.2
 >

Has anyone a clue?
I am not a R user, just the IT person who has to install it, so if  
you need additional info from inside R, please let me know how to get  
it.

Thanks a lot,
Maya


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