R package for genetic analysis of VNTR (variable number of tandem repeats) genotype data

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R package for genetic analysis of VNTR (variable number of tandem repeats) genotype data

Yuan Chun Ding
Hi R users,
Does any one know a R package for genetic analysis of VNTR (variable number of tandem repeats) genotype data? For example, performing Hardy Weinberg equilibrium test, calculating heterozygosity and polymorphism information content etc.
I am sorry if this question is not relevant to this R platform.   I have searched for 3 hours.

Thank you,

Ding

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Re: R package for genetic analysis of VNTR (variable number of tandem repeats) genotype data

Bert Gunter-2
You may get a useful answer here, but you are much more likely to at the
Bioconductor website that specializes in this sort of thing.
https://bioconductor.org/help/

Cheers,
Bert



On Thu, Jan 2, 2020 at 12:16 PM Yuan Chun Ding <[hidden email]> wrote:

> Hi R users,
> Does any one know a R package for genetic analysis of VNTR (variable
> number of tandem repeats) genotype data? For example, performing Hardy
> Weinberg equilibrium test, calculating heterozygosity and polymorphism
> information content etc.
> I am sorry if this question is not relevant to this R platform.   I have
> searched for 3 hours.
>
> Thank you,
>
> Ding
>
> ----------------------------------------------------------------------
> ------------------------------------------------------------
> -SECURITY/CONFIDENTIALITY WARNING-
>
> This message and any attachments are intended solely for the individual or
> entity to which they are addressed. This communication may contain
> information that is privileged, confidential, or exempt from disclosure
> under applicable law (e.g., personal health information, research data,
> financial information). Because this e-mail has been sent without
> encryption, individuals other than the intended recipient may be able to
> view the information, forward it to others or tamper with the information
> without the knowledge or consent of the sender. If you are not the intended
> recipient, or the employee or person responsible for delivering the message
> to the intended recipient, any dissemination, distribution or copying of
> the communication is strictly prohibited. If you received the communication
> in error, please notify the sender immediately by replying to this message
> and deleting the message and any accompanying files from your system. If,
> due to the security risks, you do not wish to rec
>  eive further communications via e-mail, please reply to this message and
> inform the sender that you do not wish to receive further e-mail from the
> sender. (LCP301)
> ------------------------------------------------------------
>
>         [[alternative HTML version deleted]]
>
> ______________________________________________
> [hidden email] mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>

        [[alternative HTML version deleted]]

______________________________________________
[hidden email] mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.