bioconductor help

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bioconductor help

pycnopodia
Hello,

I have a question on how to get bioconductor running properly on
Ubuntu 11.10 as I have tried everything it seems like and I keep on
getting this message. But before I go farther can you please email and
say that you will help me with this because nobody seems to want to
help or know how to.

"Cannot find Tcl/Tk package "Tktable". affylmGUI cannot conitnue...."

I have installed BWidget like it tells me to.

I have tried to install Tktable 2.9 but cannot.  When I try to do so I
cannot run the make file properly. Then I have ran ./configure >
output and gotten /Tktable2.9$ ./configure > output
> configure: WARNING: "Cannot find Tcl configuration definitions"

And at this point I have really no idea what to do...So please some
one help me....

Below is what happening when I try to install Tktable 2.9

Cheers,
Eric

tar zxf Tktable2.9.tar.gz

>> cd Tktable2.9
>> ./configure
>> make
>> sudo make install
>>
>> But when I run the command it says there is no make file.
>>
>> The directory looks like this
>>
>> aclocal.m4  configure.in  library      README.blt  TODO.txt
>> ChangeLog   demos         license.txt  README.txt  unix
>> config.log  doc           mac          tclconfig   UPGRADING.txt
>> configure   generic       Makefile.in  tests       win
>>
>>
>> and this is what happens when I run the make command
>>
>>
>> :~/Downloads/Tktable2.9$ make
>> make: *** No targets specified and no makefile found.  Stop.
>>
>>

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Re: bioconductor help

Sarah Goslee
At a first guess, you need to install the development packages tcl-dev and tk -dev before you run configure. If running configure fails, no makefile is generated, so your problem is with the configuration step.

It's also more likely that you'll get educated help on the Bioconductor list - I've never installed it, but have used linux for a long time.

Sarah

On Apr 1, 2012, at 3:12 PM, Eric P <[hidden email]> wrote:

> Hello,
>
> I have a question on how to get bioconductor running properly on
> Ubuntu 11.10 as I have tried everything it seems like and I keep on
> getting this message. But before I go farther can you please email and
> say that you will help me with this because nobody seems to want to
> help or know how to.
>
> "Cannot find Tcl/Tk package "Tktable". affylmGUI cannot conitnue...."
>
> I have installed BWidget like it tells me to.
>
> I have tried to install Tktable 2.9 but cannot.  When I try to do so I
> cannot run the make file properly. Then I have ran ./configure >
> output and gotten /Tktable2.9$ ./configure > output
>> configure: WARNING: "Cannot find Tcl configuration definitions"
>
> And at this point I have really no idea what to do...So please some
> one help me....
>
> Below is what happening when I try to install Tktable 2.9
>
> Cheers,
> Eric
>
> tar zxf Tktable2.9.tar.gz
>>> cd Tktable2.9
>>> ./configure
>>> make
>>> sudo make install
>>>
>>> But when I run the command it says there is no make file.
>>>
>>> The directory looks like this
>>>
>>> aclocal.m4  configure.in  library      README.blt  TODO.txt
>>> ChangeLog   demos         license.txt  README.txt  unix
>>> config.log  doc           mac          tclconfig   UPGRADING.txt
>>> configure   generic       Makefile.in  tests       win
>>>
>>>
>>> and this is what happens when I run the make command
>>>
>>>
>>> :~/Downloads/Tktable2.9$ make
>>> make: *** No targets specified and no makefile found.  Stop.
>>>
>>>
>
> ______________________________________________
> [hidden email] mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

______________________________________________
[hidden email] mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.