broken installation on ubuntu 16.04 for 3.4.4-1xenial0

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broken installation on ubuntu 16.04 for 3.4.4-1xenial0

KZ Win
We have a test  system for boostrapping a production machine running R
code.  It spins up a new machine and tries to install this version whenever
there is a new commit to our infrastructure code repo.  This version has
been in place since Mar 2018 but a few weeks ago this test fails because it
can no longer install this package even though we have not made any changes
to this installation process.

The failure comes with this message

```
WARNING: The following packages cannot be authenticated!
r-base-core r-cran-boot r-cran-cluster r-cran-foreign r-cran-mass
r-cran-kernsmooth r-cran-lattice r-cran-nlme r-cran-matrix r-cran-mgcv
r-cran-rpart r-cran-survival r-cran-class r-cran-nnet r-cran-spatial
r-cran-codetools r-recommended r-base r-base-dev r-base-html r-doc-html
STDERR: E: There were unauthenticated packages and -y was used without
--allow-unauthenticated```

Any idea on whether there is a way to install `r-base` without using
`--allow-unauthenticated`

I can provide more information if necessary.

Thank you

        [[alternative HTML version deleted]]

______________________________________________
[hidden email] mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Re: broken installation on ubuntu 16.04 for 3.4.4-1xenial0

Jeff Newmiller
As the Posting Guide says... this is a plain text mailing list. You will help yourself if you pay attention when posting.

The standard instructions for Ubuntu [1] describe how to set up authentication.

[1] https://cran.r-project.org/bin/linux/ubuntu/README.html

On August 6, 2019 10:52:05 AM PDT, KZ Win <[hidden email]> wrote:

>We have a test  system for boostrapping a production machine running R
>code.  It spins up a new machine and tries to install this version
>whenever
>there is a new commit to our infrastructure code repo.  This version
>has
>been in place since Mar 2018 but a few weeks ago this test fails
>because it
>can no longer install this package even though we have not made any
>changes
>to this installation process.
>
>The failure comes with this message
>
>```
>WARNING: The following packages cannot be authenticated!
>r-base-core r-cran-boot r-cran-cluster r-cran-foreign r-cran-mass
>r-cran-kernsmooth r-cran-lattice r-cran-nlme r-cran-matrix r-cran-mgcv
>r-cran-rpart r-cran-survival r-cran-class r-cran-nnet r-cran-spatial
>r-cran-codetools r-recommended r-base r-base-dev r-base-html r-doc-html
>STDERR: E: There were unauthenticated packages and -y was used without
>--allow-unauthenticated```
>
>Any idea on whether there is a way to install `r-base` without using
>`--allow-unauthenticated`
>
>I can provide more information if necessary.
>
>Thank you
>
> [[alternative HTML version deleted]]
>
>______________________________________________
>[hidden email] mailing list -- To UNSUBSCRIBE and more, see
>https://stat.ethz.ch/mailman/listinfo/r-help
>PLEASE do read the posting guide
>http://www.R-project.org/posting-guide.html
>and provide commented, minimal, self-contained, reproducible code.

--
Sent from my phone. Please excuse my brevity.

______________________________________________
[hidden email] mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Re: broken installation on ubuntu 16.04 for 3.4.4-1xenial0

KZ Win
Sorry for unintentionally sending a rich text email.

I have confirmed that installation follows ubuntu guide lines in your link and I reproduce the output of git blame of the installation recipe showing that it has always been using the right key.  The change before we get these errors are on March 2019.  The unauthenticated errors start late july or so.  This recipe runs at least once every week for a year or more and only a few weeks ago the installation fails.


71637a7e7 (MK 2018-01-08 16:03:26 -0500  40) apt_repository 'rproject' do
71637a7e7 (MK 2018-01-08 16:03:26 -0500  41)   uri 'http://cran.r-project.org/bin/linux/ubuntu'
5b7928b56 (MK 2018-01-05 13:16:07 -0500  42)   keyserver 'keyserver.ubuntu.com'
5b7928b56 (MK 2018-01-05 13:16:07 -0500  43)   key 'E084DAB9'
71637a7e7 (MK 2018-01-08 16:03:26 -0500  44)   components ['']
71637a7e7 (MK 2018-01-08 16:03:26 -0500  45)   distribution node['lsb']['codename'] + '/'
71637a7e7 (MK 2018-01-08 16:03:26 -0500  46)   action :add
5b7928b56 (MK 2018-01-05 13:16:07 -0500  47) end
5b7928b56 (MK 2018-01-05 13:16:07 -0500  48)
5b7928b56 (MK 2018-01-05 13:16:07 -0500  49) package 'r-base' do
5a1e57649 (k z  2018-03-19 19:21:02 -0400  50)   version '3.4.4-1xenial0'
86242e5cf (k z   2019-08-07 08:27:42 -0400  51)   options '--allow-unauthenticated'
5b7928b56 (MK 2018-01-05 13:16:07 -0500  52) end



> On Aug 6, 2019, at 9:13 PM, Jeff Newmiller <[hidden email]> wrote:
>
> As the Posting Guide says... this is a plain text mailing list. You will help yourself if you pay attention when posting.
>
> The standard instructions for Ubuntu [1] describe how to set up authentication.
>
> [1] https://cran.r-project.org/bin/linux/ubuntu/README.html
>
> On August 6, 2019 10:52:05 AM PDT, KZ Win <[hidden email]> wrote:
>> We have a test  system for boostrapping a production machine running R
>> code.  It spins up a new machine and tries to install this version
>> whenever
>> there is a new commit to our infrastructure code repo.  This version
>> has
>> been in place since Mar 2018 but a few weeks ago this test fails
>> because it
>> can no longer install this package even though we have not made any
>> changes
>> to this installation process.
>>
>> The failure comes with this message
>>
>> ```
>> WARNING: The following packages cannot be authenticated!
>> r-base-core r-cran-boot r-cran-cluster r-cran-foreign r-cran-mass
>> r-cran-kernsmooth r-cran-lattice r-cran-nlme r-cran-matrix r-cran-mgcv
>> r-cran-rpart r-cran-survival r-cran-class r-cran-nnet r-cran-spatial
>> r-cran-codetools r-recommended r-base r-base-dev r-base-html r-doc-html
>> STDERR: E: There were unauthenticated packages and -y was used without
>> --allow-unauthenticated```
>>
>> Any idea on whether there is a way to install `r-base` without using
>> `--allow-unauthenticated`
>>
>> I can provide more information if necessary.
>>
>> Thank you
>>
>> [[alternative HTML version deleted]]
>>
>> ______________________________________________
>> [hidden email] mailing list -- To UNSUBSCRIBE and more, see
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>
> --
> Sent from my phone. Please excuse my brevity.

______________________________________________
[hidden email] mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Re: broken installation on ubuntu 16.04 for 3.4.4-1xenial0

David Winsemius
The proper place for Ubuntu/Debian questions is [hidden email]


--

David

On 8/8/19 12:52 PM, [hidden email] wrote:

> Sorry for unintentionally sending a rich text email.
>
> I have confirmed that installation follows ubuntu guide lines in your link and I reproduce the output of git blame of the installation recipe showing that it has always been using the right key.  The change before we get these errors are on March 2019.  The unauthenticated errors start late july or so.  This recipe runs at least once every week for a year or more and only a few weeks ago the installation fails.
>
>
> 71637a7e7 (MK 2018-01-08 16:03:26 -0500  40) apt_repository 'rproject' do
> 71637a7e7 (MK 2018-01-08 16:03:26 -0500  41)   uri 'http://cran.r-project.org/bin/linux/ubuntu'
> 5b7928b56 (MK 2018-01-05 13:16:07 -0500  42)   keyserver 'keyserver.ubuntu.com'
> 5b7928b56 (MK 2018-01-05 13:16:07 -0500  43)   key 'E084DAB9'
> 71637a7e7 (MK 2018-01-08 16:03:26 -0500  44)   components ['']
> 71637a7e7 (MK 2018-01-08 16:03:26 -0500  45)   distribution node['lsb']['codename'] + '/'
> 71637a7e7 (MK 2018-01-08 16:03:26 -0500  46)   action :add
> 5b7928b56 (MK 2018-01-05 13:16:07 -0500  47) end
> 5b7928b56 (MK 2018-01-05 13:16:07 -0500  48)
> 5b7928b56 (MK 2018-01-05 13:16:07 -0500  49) package 'r-base' do
> 5a1e57649 (k z  2018-03-19 19:21:02 -0400  50)   version '3.4.4-1xenial0'
> 86242e5cf (k z   2019-08-07 08:27:42 -0400  51)   options '--allow-unauthenticated'
> 5b7928b56 (MK 2018-01-05 13:16:07 -0500  52) end
>
>
>
>> On Aug 6, 2019, at 9:13 PM, Jeff Newmiller <[hidden email]> wrote:
>>
>> As the Posting Guide says... this is a plain text mailing list. You will help yourself if you pay attention when posting.
>>
>> The standard instructions for Ubuntu [1] describe how to set up authentication.
>>
>> [1] https://cran.r-project.org/bin/linux/ubuntu/README.html
>>
>> On August 6, 2019 10:52:05 AM PDT, KZ Win <[hidden email]> wrote:
>>> We have a test  system for boostrapping a production machine running R
>>> code.  It spins up a new machine and tries to install this version
>>> whenever
>>> there is a new commit to our infrastructure code repo.  This version
>>> has
>>> been in place since Mar 2018 but a few weeks ago this test fails
>>> because it
>>> can no longer install this package even though we have not made any
>>> changes
>>> to this installation process.
>>>
>>> The failure comes with this message
>>>
>>> ```
>>> WARNING: The following packages cannot be authenticated!
>>> r-base-core r-cran-boot r-cran-cluster r-cran-foreign r-cran-mass
>>> r-cran-kernsmooth r-cran-lattice r-cran-nlme r-cran-matrix r-cran-mgcv
>>> r-cran-rpart r-cran-survival r-cran-class r-cran-nnet r-cran-spatial
>>> r-cran-codetools r-recommended r-base r-base-dev r-base-html r-doc-html
>>> STDERR: E: There were unauthenticated packages and -y was used without
>>> --allow-unauthenticated```
>>>
>>> Any idea on whether there is a way to install `r-base` without using
>>> `--allow-unauthenticated`
>>>
>>> I can provide more information if necessary.
>>>
>>> Thank you
>>>
>>> [[alternative HTML version deleted]]
>>>
>>> ______________________________________________
>>> [hidden email] mailing list -- To UNSUBSCRIBE and more, see
>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>> PLEASE do read the posting guide
>>> http://www.R-project.org/posting-guide.html
>>> and provide commented, minimal, self-contained, reproducible code.
>> --
>> Sent from my phone. Please excuse my brevity.
> ______________________________________________
> [hidden email] mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

______________________________________________
[hidden email] mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.