location of Sweave.sty in R devel (2010-06-15 r52280)

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location of Sweave.sty in R devel (2010-06-15 r52280)

Charles Geyer
Sorry if I was supposed to file a bug report, but I don't know whether
we're supposed to do that on R devel.  I just built R devel from source
(2010-06-15 r52280) and tried to check a package with it and Sweave
failed on the vignette.  It puts the line

\usepackage{/HOME/faculty/charlie/local/devel/lib64/R/share/texmf/Sweave}

in the *.tex file but, that's not where Sweave.sty is

oak$ find ~/local/devel -name Sweave.sty
/HOME/faculty/charlie/local/devel/lib64/R/share/texmf/tex/latex/Sweave.sty

All I did was configure; make; make install and the only configure
flags were --prefix=/HOME/faculty/charlie/local/devel
and --with-valgrind-instrumentation=2   Don't see why either would mess
up Sweave.

On a linux box (openSUSE 11.1 (x86_64)).

The day before I built R-2.11.1 the same way and it works fine.

--
Charles Geyer
Professor, School of Statistics
University of Minnesota
[hidden email]

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Re: location of Sweave.sty in R devel (2010-06-15 r52280)

Prof Brian Ripley
That is not the default behaviour of Sweave, which is to use
\usepackage{Sweave}.  Do you have SWEAVE_STYLEPATH_DEFAULT set, or
some other non-standard setting that would cause this?  (That is even
less needed than before, and it may be removed before 2.12.0 is
released.)

All of CRAN and BioC have been checked in the last 24 hours with
standard settings, so this does look like a problem with some
non-standard setup.

If we can reproduce it we can address the problem, but there is
nothing here that I can do more than guess at.

On Tue, 15 Jun 2010, Charles Geyer wrote:

> Sorry if I was supposed to file a bug report, but I don't know whether
> we're supposed to do that on R devel.  I just built R devel from source
> (2010-06-15 r52280) and tried to check a package with it and Sweave
> failed on the vignette.  It puts the line
>
> \usepackage{/HOME/faculty/charlie/local/devel/lib64/R/share/texmf/Sweave}
>
> in the *.tex file but, that's not where Sweave.sty is
>
> oak$ find ~/local/devel -name Sweave.sty
> /HOME/faculty/charlie/local/devel/lib64/R/share/texmf/tex/latex/Sweave.sty
>
> All I did was configure; make; make install and the only configure
> flags were --prefix=/HOME/faculty/charlie/local/devel
> and --with-valgrind-instrumentation=2   Don't see why either would mess
> up Sweave.
>
> On a linux box (openSUSE 11.1 (x86_64)).
>
> The day before I built R-2.11.1 the same way and it works fine.
>
> --
> Charles Geyer
> Professor, School of Statistics
> University of Minnesota
> [hidden email]
>
> ______________________________________________
> [hidden email] mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>

--
Brian D. Ripley,                  [hidden email]
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595

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Re: location of Sweave.sty in R devel (2010-06-15 r52280)

Paul Gilbert
Charles

For some time I have had to add R to the tex paths:

export TEXINPUTS="~/texmf/tex/latex:$RHOME/share/texmf:"
export BSTINPUTS="~/texmf/bibtex/bst:$RHOME/share/texmf:"  

to get vignettes to build.  Not sure if I am still suppose to need to do
that, but the symptom looks the same.

Paul

>-----Original Message-----
>From: [hidden email] [mailto:r-devel-bounces@r-
>project.org] On Behalf Of Prof Brian Ripley
>Sent: June 15, 2010 6:23 PM
>To: Charles Geyer
>Cc: [hidden email]
>Subject: Re: [Rd] location of Sweave.sty in R devel (2010-06-15 r52280)
>
>That is not the default behaviour of Sweave, which is to use
>\usepackage{Sweave}.  Do you have SWEAVE_STYLEPATH_DEFAULT set, or
>some other non-standard setting that would cause this?  (That is even
>less needed than before, and it may be removed before 2.12.0 is
>released.)
>
>All of CRAN and BioC have been checked in the last 24 hours with
>standard settings, so this does look like a problem with some
>non-standard setup.
>
>If we can reproduce it we can address the problem, but there is
>nothing here that I can do more than guess at.
>
>On Tue, 15 Jun 2010, Charles Geyer wrote:
>
>> Sorry if I was supposed to file a bug report, but I don't know
whether
>> we're supposed to do that on R devel.  I just built R devel from
>source
>> (2010-06-15 r52280) and tried to check a package with it and Sweave
>> failed on the vignette.  It puts the line
>>
>>
>\usepackage{/HOME/faculty/charlie/local/devel/lib64/R/share/texmf/Sweav
e
>}
>>
>> in the *.tex file but, that's not where Sweave.sty is
>>
>> oak$ find ~/local/devel -name Sweave.sty
>>
>/HOME/faculty/charlie/local/devel/lib64/R/share/texmf/tex/latex/Sweave.
s

>ty
>>
>> All I did was configure; make; make install and the only configure
>> flags were --prefix=/HOME/faculty/charlie/local/devel
>> and --with-valgrind-instrumentation=2   Don't see why either would
>mess
>> up Sweave.
>>
>> On a linux box (openSUSE 11.1 (x86_64)).
>>
>> The day before I built R-2.11.1 the same way and it works fine.
>>
>> --
>> Charles Geyer
>> Professor, School of Statistics
>> University of Minnesota
>> [hidden email]
>>
>> ______________________________________________
>> [hidden email] mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-devel
>>
>
>--
>Brian D. Ripley,                  [hidden email]
>Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
>University of Oxford,             Tel:  +44 1865 272861 (self)
>1 South Parks Road,                     +44 1865 272866 (PA)
>Oxford OX1 3TG, UK                Fax:  +44 1865 272595
>
>______________________________________________
>[hidden email] mailing list
>https://stat.ethz.ch/mailman/listinfo/r-devel
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Re: location of Sweave.sty in R devel (2010-06-15 r52280)

Charles Geyer
In reply to this post by Prof Brian Ripley
On Tue, Jun 15, 2010 at 11:23:09PM +0100, Prof Brian Ripley wrote:
> That is not the default behaviour of Sweave, which is to use
> \usepackage{Sweave}.  Do you have SWEAVE_STYLEPATH_DEFAULT set, or
> some other non-standard setting that would cause this?  (That is even
> less needed than before, and it may be removed before 2.12.0 is
> released.)

oak$ ~/local/devel/bin/R --vanilla --quiet
> Sys.getenv()["SWEAVE_STYLEPATH_DEFAULT"]
SWEAVE_STYLEPATH_DEFAULT
                  "TRUE"

Sorry.  I forgot about that.

I should take that out of my .bashrc I suppose?  Done.

I apologize for bothering the list about a stupid luser problem.

>
> All of CRAN and BioC have been checked in the last 24 hours with
> standard settings, so this does look like a problem with some
> non-standard setup.
>
> If we can reproduce it we can address the problem, but there is
> nothing here that I can do more than guess at.
>
> On Tue, 15 Jun 2010, Charles Geyer wrote:
>
> >Sorry if I was supposed to file a bug report, but I don't know whether
> >we're supposed to do that on R devel.  I just built R devel from source
> >(2010-06-15 r52280) and tried to check a package with it and Sweave
> >failed on the vignette.  It puts the line
> >
> >\usepackage{/HOME/faculty/charlie/local/devel/lib64/R/share/texmf/Sweave}
> >
> >in the *.tex file but, that's not where Sweave.sty is
> >
> >oak$ find ~/local/devel -name Sweave.sty
> >/HOME/faculty/charlie/local/devel/lib64/R/share/texmf/tex/latex/Sweave.sty
> >
> >All I did was configure; make; make install and the only configure
> >flags were --prefix=/HOME/faculty/charlie/local/devel
> >and --with-valgrind-instrumentation=2   Don't see why either would mess
> >up Sweave.
> >
> >On a linux box (openSUSE 11.1 (x86_64)).
> >
> >The day before I built R-2.11.1 the same way and it works fine.
> >
> >--
> >Charles Geyer
> >Professor, School of Statistics
> >University of Minnesota
> >[hidden email]
> >
> >______________________________________________
> >[hidden email] mailing list
> >https://stat.ethz.ch/mailman/listinfo/r-devel
> >
>
> --
> Brian D. Ripley,                  [hidden email]
> Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
> University of Oxford,             Tel:  +44 1865 272861 (self)
> 1 South Parks Road,                     +44 1865 272866 (PA)
> Oxford OX1 3TG, UK                Fax:  +44 1865 272595

--
Charles Geyer
Professor, School of Statistics
University of Minnesota
[hidden email]

______________________________________________
[hidden email] mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel